Error installing YoLink while building psutil

Scott847 · December 17, 2022

I'm getting an error trying to install YoLink on Polyglot 3.1.16 with Polisy IoX 5.4.5.

Perhaps a problem during installation while building psutil, related to limits.h not being found?

Following is the main part of the log, full log attached:

12/17/2022, 09:12:44 [pg3] info: NSChild: YoLink(1) /bin/sh: Building wheels for collected packages: psutil
12/17/2022, 09:12:44 [pg3] info: NSChild: YoLink(1) /bin/sh:   Building wheel for psutil (pyproject.toml): started
12/17/2022, 09:12:48 [pg3] info: NSChild: YoLink(1) /bin/sh:   Building wheel for psutil (pyproject.toml): finished with status 'error'
12/17/2022, 09:12:48 [pg3] error: NSChild: YoLink(1) /bin/sh:   error: subprocess-exited-with-error
  × Building wheel for psutil (pyproject.toml) did not run successfully.
  │ exit code: 1
  ╰─> [48 lines of output]
      running bdist_wheel
      running build
      running build_py
      creating build
      creating build/lib.freebsd-13.1-RELEASE-p5-amd64-cpython-39
      creating build/lib.freebsd-13.1-RELEASE-p5-amd64-cpython-39/psutil
      copying psutil/_psposix.py -> build/lib.freebsd-13.1-RELEASE-p5-amd64-cpython-39/psutil
      copying psutil/_pswindows.py -> build/lib.freebsd-13.1-RELEASE-p5-amd64-cpython-39/psutil
      copying psutil/_pssunos.py -> build/lib.freebsd-13.1-RELEASE-p5-amd64-cpython-39/psutil
<snip>
      copying psutil/tests/test_sunos.py -> build/lib.freebsd-13.1-RELEASE-p5-amd64-cpython-39/psutil/tests
      copying psutil/tests/test_system.py -> build/lib.freebsd-13.1-RELEASE-p5-amd64-cpython-39/psutil/tests
      copying psutil/tests/test_osx.py -> build/lib.freebsd-13.1-RELEASE-p5-amd64-cpython-39/psutil/tests
      running build_ext
      building 'psutil._psutil_bsd' extension
      creating build/temp.freebsd-13.1-RELEASE-p5-amd64-cpython-39
      creating build/temp.freebsd-13.1-RELEASE-p5-amd64-cpython-39/psutil
      creating build/temp.freebsd-13.1-RELEASE-p5-amd64-cpython-39/psutil/arch
      creating build/temp.freebsd-13.1-RELEASE-p5-amd64-cpython-39/psutil/arch/freebsd
      cc -pthread -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -DPSUTIL_POSIX=1 -DPSUTIL_BSD=1 -DPSUTIL_SIZEOF_PID_T=4 -DPSUTIL_VERSION=594 -DPSUTIL_FREEBSD=1 -I/usr/local/include/python3.9 -c psutil/_psutil_bsd.c -o build/temp.freebsd-13.1-RELEASE-p5-amd64-cpython-39/psutil/_psutil_bsd.o
      In file included from psutil/_psutil_bsd.c:22:
      /usr/local/include/python3.9/Python.h:11:10: fatal error: 'limits.h' file not found
      #include <limits.h>
               ^~~~~~~~~~
      1 error generated.
      error: command '/usr/bin/cc' failed with exit code 1
      [end of output]
  note: This error originates from a subprocess, and is likely not a problem with pip.
12/17/2022, 09:12:48 [pg3] error: NSChild: YoLink(1) /bin/sh:   ERROR: Failed building wheel for psutil
12/17/2022, 09:12:48 [pg3] info: NSChild: YoLink(1) /bin/sh: Failed to build psutil
12/17/2022, 09:12:48 [pg3] error: NSChild: YoLink(1) /bin/sh: ERROR: Could not build wheels for psutil, which is required to install pyproject.toml-based projects

2022-12-17 YoLink Installation Log.txt

Panda88 · December 17, 2022

yes - looks like a build error - I was on 5.4.4 when building it and used release 5.9.2

@Michel Kohanim - Any input as to why psutil will fail build on 5.4.5?

Scott847 · December 17, 2022

1 hour ago, Panda88 said:

yes - looks like a build error - I was on 5.4.4 when building it and used release 5.9.2

@Michel Kohanim - Any input as to why psutil will fail build on 5.4.5?

@Michel Kohanim - FYI I'm getting the same psutil build errors using yesterday's updated IoX 5.5.0 on a Polisy that I reinstalled on Tuesday with the Polisy FreeBSD 13.1 mSATA image.

12/17/2022, 12:26:15 [pg3] info: NSChild: YoLink(1) /bin/sh: Building wheels for collected packages: psutil
12/17/2022, 12:26:15 [pg3] info: NSChild: YoLink(1) /bin/sh:   Building wheel for psutil (pyproject.toml): started
12/17/2022, 12:26:18 [pg3] info: NSChild: YoLink(1) /bin/sh:   Building wheel for psutil (pyproject.toml): finished with status 'error'
12/17/2022, 12:26:19 [pg3] error: NSChild: YoLink(1) /bin/sh:   error: subprocess-exited-with-error
  
  × Building wheel for psutil (pyproject.toml) did not run successfully.
  │ exit code: 1
  ╰─> [48 lines of output]
      running bdist_wheel
      running build
      running build_py
      creating build
      creating build/lib.freebsd-13.1-RELEASE-p5-amd64-cpython-39
      creating build/lib.freebsd-13.1-RELEASE-p5-amd64-cpython-39/psutil
      copying psutil/__init__.py -> build/lib.freebsd-13.1-RELEASE-p5-amd64-cpython-39/psutil
      copying psutil/_pslinux.py -> build/lib.freebsd-13.1-RELEASE-p5-amd64-cpython-39/psutil
      copying psutil/_psaix.py -> build/lib.freebsd-13.1-RELEASE-p5-amd64-cpython-39/psutil
<snip>
      copying psutil/tests/test_testutils.py -> build/lib.freebsd-13.1-RELEASE-p5-amd64-cpython-39/psutil/tests
      copying psutil/tests/test_aix.py -> build/lib.freebsd-13.1-RELEASE-p5-amd64-cpython-39/psutil/tests
      copying psutil/tests/test_process.py -> build/lib.freebsd-13.1-RELEASE-p5-amd64-cpython-39/psutil/tests
      running build_ext
      building 'psutil._psutil_bsd' extension
      creating build/temp.freebsd-13.1-RELEASE-p5-amd64-cpython-39
      creating build/temp.freebsd-13.1-RELEASE-p5-amd64-cpython-39/psutil
      creating build/temp.freebsd-13.1-RELEASE-p5-amd64-cpython-39/psutil/arch
      creating build/temp.freebsd-13.1-RELEASE-p5-amd64-cpython-39/psutil/arch/freebsd
      cc -pthread -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -DPSUTIL_POSIX=1 -DPSUTIL_BSD=1 -DPSUTIL_SIZEOF_PID_T=4 -DPSUTIL_VERSION=594 -DPSUTIL_FREEBSD=1 -I/usr/local/include/python3.9 -c psutil/_psutil_bsd.c -o build/temp.freebsd-13.1-RELEASE-p5-amd64-cpython-39/psutil/_psutil_bsd.o
      In file included from psutil/_psutil_bsd.c:22:
      /usr/local/include/python3.9/Python.h:11:10: fatal error: 'limits.h' file not found
      #include <limits.h>
               ^~~~~~~~~~
      1 error generated.
      error: command '/usr/bin/cc' failed with exit code 1
      [end of output]
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
12/17/2022, 12:26:19 [pg3] error: NSChild: YoLink(1) /bin/sh:   ERROR: Failed building wheel for psutil
12/17/2022, 12:26:19 [pg3] info: NSChild: YoLink(1) /bin/sh: Failed to build psutil
12/17/2022, 12:26:19 [pg3] error: NSChild: YoLink(1) /bin/sh: ERROR: Could not build wheels for psutil, which is required to install pyproject.toml-based projects

Panda88 · December 17, 2022

I can try to force the original version I was using in the requirements

@Michel Kohanim - Can I get you to try to build version 5.9.2

I do not feel like trying to edit this package

Edited December 17, 2022 by Panda88

Panda88 · December 21, 2022

I did update the requirement.txt to force the version I use - Can you try to delete and reinstall ?

Scott847 · December 22, 2022

5 hours ago, Panda88 said:

I did update the requirement.txt to force the version I use - Can you try to delete and reinstall ?

I'm getting a different error: "NSChild: YoLink(1) /bin/sh: ERROR: Invalid requirement: 'psutil=5.9.2' (from line 4 of requirements.txt) Hint: = is not a valid operator. Did you mean == ?"

Here's the complete log:

12/21/2022, 18:10:23 [pg3] info: [XX:XX:XX:XX:XX:XX_1] :: Creating Node Server 'YoLink'
12/21/2022, 18:10:23 [pg3] info: Adding customparams entries to custom database
12/21/2022, 18:10:23 [pg3] info: Adding nsdata, oauth entries to custom database
12/21/2022, 18:10:23 [pg3] info: [XX:XX:XX:XX:XX:XX_1] Set nsdata
12/21/2022, 18:10:23 [pg3] info: [XX:XX:XX:XX:XX:XX_1] Set oauth
12/21/2022, 18:10:23 [pg3] info: checkLicense:: Updaing YoLink subscription expiration to 2023-01-01T05:24:10.000Z
12/21/2022, 18:10:23 [pg3] info: checkLicense:: YoLink Valid subscription license found. Expires: 2023-01-01T05:24:10.000Z
12/21/2022, 18:10:23 [pg3] warn: YoLink home directory exists already.
12/21/2022, 18:10:23 [pg3] info: [XX:XX:XX:XX:XX:XX_1] :: Cloning repository... https://github.com/Panda88CO/udi-yolink into /var/polyglot/pg3/ns/XXXXXXXXXXXX_1
12/21/2022, 18:10:31 [pg3] info: [XX:XX:XX:XX:XX:XX_1] :: Installation Complete. Added 'YoLink' to database...
12/21/2022, 18:10:31 [pg3] info: [XX:XX:XX:XX:XX:XX_1] 'YoLink' installed into ISY successfully...
12/21/2022, 18:10:34 [pg3] info: NSChild: YoLink(1) /bin/sh: Defaulting to user installation because normal site-packages is not writeable
12/21/2022, 18:10:35 [pg3] info: NSChild: YoLink(1) /bin/sh: Requirement already satisfied: pip in /usr/local/lib/python3.9/site-packages (22.2.2)
12/21/2022, 18:10:36 [pg3] info: NSChild: YoLink(1) /bin/sh: Collecting pip
12/21/2022, 18:10:36 [pg3] info: NSChild: YoLink(1) /bin/sh:   Using cached pip-22.3.1-py3-none-any.whl (2.1 MB)
12/21/2022, 18:10:37 [pg3] info: [XX:XX:XX:XX:XX:XX_1] Retrieved customparams
12/21/2022, 18:10:37 [pg3] info: [XX:XX:XX:XX:XX:XX_1] Retrieved oauth
12/21/2022, 18:10:38 [pg3] info: NSChild: YoLink(1) /bin/sh: Installing collected packages: pip
12/21/2022, 18:10:51 [pg3] error: NSChild: YoLink(1) /bin/sh:   WARNING: The scripts pip, pip3 and pip3.9 are installed in '/var/polyglot/.local/bin' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
12/21/2022, 18:10:51 [pg3] info: NSChild: YoLink(1) /bin/sh: Successfully installed pip-22.3.1
12/21/2022, 18:10:55 [pg3] error: NSChild: YoLink(1) /bin/sh: ERROR: Invalid requirement: 'psutil=5.9.2' (from line 4 of requirements.txt)
Hint: = is not a valid operator. Did you mean == ?
12/21/2022, 18:10:55 [pg3] info: NSChild: YoLink(1) /bin/sh: exited with cause code: 1
12/21/2022, 18:10:55 [pg3] error: installNs: Error: Non-zero exit code: 1
    at ChildProcess.<anonymous> (/var/polyglot/node_modules/@universaldevices/pg3/lib/services/node servers.js:53:30)
    at ChildProcess.emit (node:events:513:28)
    at maybeClose (node:internal/child_process:1091:16)
    at ChildProcess._handle.onexit (node:internal/child_process:302:5)
12/21/2022, 18:10:55 [pg3] info: startNs:: YoLink
12/21/2022, 18:10:55 [pg3] info: startNs:: YoLink is valid
12/21/2022, 18:10:56 [pg3] info: checkLicense:: YoLink Valid subscription license found. Expires: 2023-01-01T05:24:10.000Z
12/21/2022, 18:10:56 [pg3] info: startNs:: YoLink finished update check
12/21/2022, 18:10:56 [pg3] info: [YoLink(1)] :: Starting Node Server - Version 0.7.3
12/21/2022, 18:10:56 [pg3] info: startNs:: YoLink updating database (enabled, timestarted)
12/21/2022, 18:10:57 [pg3] info: startNs:: YoLink starting polls
12/21/2022, 18:10:57 [pg3] info: Checking if ${Node Server.name} has expired
12/21/2022, 18:10:57 [pg3] info: Starting Node Server Info timer 0
12/21/2022, 18:10:57 [pg3] error: [YoLink(1)] :: STDERR: Traceback (most recent call last):
  File "/var/polyglot/pg3/ns/XXXXXXXXXXXX_1/./udi-YoLink.py", line 11, in <module>
12/21/2022, 18:10:57 [pg3] error: [YoLink(1)] :: STDERR:     from yoLink_init_V3 import YoLinkInitPAC
  File "/var/polyglot/pg3/ns/XXXXXXXXXXXX_1/yoLink_init_V3.py", line 5, in <module>
    import psutil
ModuleNotFoundError: No module named 'psutil'
12/21/2022, 18:10:57 [pg3] info: [YoLink(1)] :: Exit cause code: 1 - signal: null

Scott847 · December 23, 2022

On 12/21/2022 at 2:59 PM, Panda88 said:

I did update the requirement.txt to force the version I use - Can you try to delete and reinstall ?

I noticed you're specifying "psutil==5.9.2" in requirements.txt and now I'm getting the previous error again.

It appears PG3 isn't finding psutil so it tries to run the c compiler to build psutil and runs into an error because it can't find "limits.h".

I assume this limits.h include file must be somewhere on your system but not mine. Do you know where limits.h is located on your system? Or what I can install that would include this file?

This is the log showing the psutil compile failure:

cc -pthread -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -DPSUTIL_POSIX=1 -DPSUTIL_BSD=1 -DPSUTIL_SIZEOF_PID_T=4 -DPSUTIL_VERSION=592 -DPSUTIL_FREEBSD=1 -I/usr/local/include/python3.9 -c psutil/_psutil_bsd.c -o build/temp.freebsd-13.1-RELEASE-p5-amd64-cpython-39/psutil/_psutil_bsd.o
In file included from psutil/_psutil_bsd.c:22:
/usr/local/include/python3.9/Python.h:11:10: fatal error: 'limits.h' file not found
#include <limits.h>
         ^~~~~~~~~~
1 error generated.
error: command '/usr/bin/cc' failed with exit code 1

Scott847 · December 23, 2022

I was able to get YoLink installed and it appears to be working great! Temp/humidity sensors and leak sensors are all reporting normally.

The problem I was experiencing during installation was a failure when automatically compiling psutil after the PG3 YoLink node server couldn't find psutil 5.9.2.

I'm not sure if this is a workaround in need of a permanent solution, or a solution that should be documented. Anyway, the solution was to install the psutil package:

sudo pkg install py39-psutil

Panda88 · December 23, 2022

Thanks - unfortunately PG3 uses pip for install - I may be able to use pkg as part of the install script - need to experiment a little

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