I just upgraded my ISY994 to a new EISY and I'm trying to get my IR functionality back.  I use the IR commands to trigger programs for lighting scenes in my theater with my Harmony Elite. I followed the instructions on the UD page...I installed Flirc software, downloaded the config file and loaded it, purchased and installed the EISYIR node server, plugged in the Flirc and nothing.  I've rebooted the EISY, rebooted the node server, pulled out the Flirc and put it back in, deleted the node server and reinstalled, reloaded the config on the Flirc and nothing.  When I pull up the event viewer in the admin console, nothing happens when I push buttons on my remote, like the Flirc isn't seeing the IR.  The "eISY IR controller" is listed under ISY on the admin console and in PolyGlot, the IR Controller shows "Connected". I've tried commands directly from the remote as well as the Harmony Hub only and nothing happens.  Thanks for any help you can provide.  

PM me and we will get it working. Seems like your remote is not triggering Flirc keypresses. Otherwise, you would see nodes under main controller. If your remote does not use "original ISY994 codeset", you need to teach its commands to Flirc. We can test it on any computer.